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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25201442_25210155_F

Intron Information:

Intron Rank:
125894
Intron Class:
major
Intron Phase:
Intron Coordinates:
25201442 - 25210155
Intron Length:
8714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
ATTTTCCCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
78
0.63
0.9
73.9
40.7
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
46.6
-0.1
2
70.84
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017818
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022325
25200724 - 25212407
11684