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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25269258_25269810_F

Intron Information:

Intron Rank:
137053
Intron Class:
major
Intron Phase:
Intron Coordinates:
25269258 - 25269810
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGCGCTTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.2
0.61
0.9
72.5
36.5
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
55.9
0.05
1.5
53.72
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023800
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040799
25267092 - 25272742
5651