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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25269258_25271617_F

Intron Information:

Intron Rank:
137050
Intron Class:
major
Intron Phase:
Intron Coordinates:
25269258 - 25271617
Intron Length:
2360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCAACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
100
1.24
0.5
100
0
Major PPT
70.1
0.45
1
67.4
38
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
61.9
0.45
1.6
76.56
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023800
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025197
25268906 - 25271998
3093