Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25380534_25384663_F

Intron Information:

Intron Rank:

150584

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

25380534 - 25384663

Intron Length:

4130

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATCATTT

5'SS Class:

weak_major

3'SS Sequence:

TTTGTGCATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACAGAT

U12 Branch Point Sequence:

TCCTGTGTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.2

74.2

37.1

Major BPS

57.5

0.19

52.7

34.2

Major PPT

76.1

0.59

69.6

40.8

Minor 5ss

69.3

0.65

2.3

82.5

37.1

Minor BPS

47.2

-0.2

2.3

61.93

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030909

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024891

25379906 - 25387221

7316