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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25384831_25385718_F

Intron Information:

Intron Rank:
150585
Intron Class:
major
Intron Phase:
Intron Coordinates:
25384831 - 25385718
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGGATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTCCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
30.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68.8
0.42
1
66.6
44.3
Minor 5ss
40.8
-1
2.8
53.7
43.5
Minor BPS
66.2
0.59
1.8
85.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030909
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035535
25384664 - 25387647
2984
ENSAPLT00000024891
25379906 - 25387221
7316