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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25384831_25386404_F

Intron Information:

Intron Rank:
150588
Intron Class:
major
Intron Phase:
Intron Coordinates:
25384831 - 25386404
Intron Length:
1574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCAGGCCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
30.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.7
0.87
0.7
85.2
29.2
Minor 5ss
40.8
-1
2.8
53.7
43.5
Minor BPS
48.3
-0
2.2
69.19
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030909
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025973
25377175 - 25387221
10047