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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25393302_25398412_R

Intron Information:

Intron Rank:
138771
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
25393302 - 25398412
Intron Length:
5111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACCTTTG
5'SS Class:
weak_major
3'SS Sequence:
CTTCATATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATGTCCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.2
62.6
44.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.7
0.67
0.9
72.9
35.8
Minor 5ss
48.4
-0.1
2.8
63.7
43
Minor BPS
65.4
0.48
1.7
73.39
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022170
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039292
25393099 - 25399320
6222