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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25433855_25435524_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25433855 - 25435524
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACCT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCCCCATACAG
Flanking Amino Acid:
LAVFVIYKFKRATPGHSPEP
Intron Amino Acid Position:
1143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
70.8
39.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
73
0.52
0.9
65.9
35
Minor 5ss
40.7
-1
3.1
57.7
46.5
Minor BPS
45.7
-0.4
2
55.16
45.4

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033836
25430699 - 25716285
285587