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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25435353_25435524_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25435353 - 25435524
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACCT
5'SS Class:
strong_major
3'SS Sequence:
GTTAATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCTGTTAATG
Flanking Amino Acid:
LAVFVIYKFKRKIPGLNIYA
Intron Amino Acid Position:
1143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
70.8
39.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
69.9
0.45
1
66.2
44.8
Minor 5ss
40.7
-1
3.1
57.7
46.5
Minor BPS
56.5
0.07
2.1
68.07
40.1

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587