Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25435631_25440377_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25435631 - 25440377

Intron Length:

4747

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTATC

5'SS Class:

strong_major

3'SS Sequence:

CCCTGTCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

GTGGCTGTAACC

Flanking Amino Acid:

ILVHAAHLTAAPLVDPTPSH

Intron Amino Acid Position:

1108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

1.2

85.3

32.2

Major BPS

62.2

0.3

1.2

38.7

Major PPT

78.4

0.64

0.8

71.9

32.6

Minor 5ss

35.7

-1.6

2.7

45.8

42.3

Minor BPS

49.3

-0

2.1

62.28

43.6

Associated Gene:

Gene:

SORCS1

Ensembl Gene ID:

ENSAPLG00000004914

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033836

25430699 - 25716285

285587

ENSAPLT00000022618

25430699 - 25716285

285587

ENSAPLT00000005128

25430699 - 25716285

285587