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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25454272_25455245_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25454272 - 25455245
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCCT
5'SS Class:
major
3'SS Sequence:
ATTCTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTTTACTTACCA
Flanking Amino Acid:
LQDTKTIAVYEQFQSLRLSF
Intron Amino Acid Position:
993

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
64.1
41.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.8
0.69
0.8
74.6
34.6
Minor 5ss
35.2
-1.7
3.1
45.9
43.3
Minor BPS
63.7
0.43
1.8
76.13
41.2

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033836
25430699 - 25716285
285587
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587