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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25457177_25461978_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25457177 - 25461978
Intron Length:
4802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTATGTTCA
5'SS Class:
weak_major
3'SS Sequence:
TCTGTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAG
U12 Branch Point Sequence:
GAGGACTCACCT
Flanking Amino Acid:
DNAVLYLHVTCPLEHVHLSL
Intron Amino Acid Position:
907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
63.3
37.5
Major BPS
53.7
0.09
1.5
69
38.9
Major PPT
82.9
0.74
0.8
77.1
31.6
Minor 5ss
48.6
-0.1
2.4
59.5
45
Minor BPS
42.4
-0.5
2
55.22
46

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587
ENSAPLT00000033836
25430699 - 25716285
285587