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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25470668_25471669_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25470668 - 25471669
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CTCTCTTTACCT
Flanking Amino Acid:
SVGQSYLNSTGYRKVVSNNC
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
71.1
40.4
Major BPS
74
0.6
1
65.6
41.1
Major PPT
86.6
0.82
0.8
81
30.7
Minor 5ss
32.6
-2
3.1
35.3
41.4
Minor BPS
66.1
0.58
1.7
78.9
44

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033836
25430699 - 25716285
285587
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587