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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25480050_25481691_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25480050 - 25481691
Intron Length:
1642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGATAT
U12 Branch Point Sequence:
TGTCAGAGAAAG
Flanking Amino Acid:
DYRPWQLHSQGEACIMGAKR
Intron Amino Acid Position:
706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
49
-0
1.1
44.8
38.3
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
34.5
-1.3
2.3
42.58
41.1

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033836
25430699 - 25716285
285587
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587