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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25481810_25482825_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25481810 - 25482825
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
CTGTGTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
CTACCTTTTACT
Flanking Amino Acid:
GEPGEETLIMTVFGHFSHRS
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.3
39.5
Major BPS
74.2
0.6
1
67
39.4
Major PPT
74.8
0.56
0.9
69.6
36.8
Minor 5ss
33.4
-1.9
3.2
39.4
39.8
Minor BPS
59.7
0.39
1.7
74.19
42.4

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033836
25430699 - 25716285
285587
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587