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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25482934_25483945_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25482934 - 25483945
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGACT
5'SS Class:
major
3'SS Sequence:
CTTTCTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GCTTTCTCCACT
Flanking Amino Acid:
KHTSLPIRHLWLSFDEGKSW
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.7
39
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
73.4
0.53
0.8
67.6
33.8
Minor 5ss
35.1
-1.7
3.2
47.1
42.5
Minor BPS
52
0.14
2
72.31
44.6

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587
ENSAPLT00000033836
25430699 - 25716285
285587