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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25484038_25485199_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25484038 - 25485199
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGAC
5'SS Class:
major
3'SS Sequence:
TTTATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TAGATCTAAATA
Flanking Amino Acid:
SADAGNTWRQIFEEEHSVLY
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.8
33.1
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
38.4
-1.3
3.2
51.5
45.7
Minor BPS
51.7
0.05
1.7
60.47
40

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033836
25430699 - 25716285
285587
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587