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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25485797_25490884_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25485797 - 25490884
Intron Length:
5088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CCTTTCTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTTTTATT
Flanking Amino Acid:
LRGNPVHCLLPYCSLHLHLK
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.2
32.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.9
0.61
0.7
72.3
26
Minor 5ss
37.9
-1.4
2.7
45.5
37.1
Minor BPS
66.6
0.6
1.6
84.49
36.1

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033836
25430699 - 25716285
285587
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587