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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25495719_25500931_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25495719 - 25500931
Intron Length:
5213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CCTCTTGTAACA
Flanking Amino Acid:
MKLPKYSLPKDMHVISTDES
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
48.2
-0.1
2
59.25
41.4

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033836
25430699 - 25716285
285587
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587