About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25503838_25512631_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25503838 - 25512631
Intron Length:
8794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
AGGATCTCAAGT
Flanking Amino Acid:
VHLEAKTVDGHAQYITCRMQ
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.3
79.8
35.3
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
87.6
0.85
0.6
85
22.6
Minor 5ss
40.8
-1
2.8
52
39.1
Minor BPS
46.5
-0.1
1.8
59.82
43.4

Associated Gene:

Gene:
SORCS1
Ensembl Gene ID:
ENSAPLG00000004914
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033836
25430699 - 25716285
285587
ENSAPLT00000022618
25430699 - 25716285
285587
ENSAPLT00000005128
25430699 - 25716285
285587