Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25528463_25542315_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25528463 - 25542315

Intron Length:

13853

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGTCCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

AGATTCATGACT

Flanking Amino Acid:

WILAYSQDQKLFSSVEFGRR

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

93.7

19.9

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

84.4

0.77

0.8

77.2

37.1

Minor 5ss

39.4

-1.2

3.1

57.6

46.6

Minor BPS

56.3

0.28

1.6

71.78

38.5

Associated Gene:

Gene:

SORCS1

Ensembl Gene ID:

ENSAPLG00000004914

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022618

25430699 - 25716285

285587

ENSAPLT00000005128

25430699 - 25716285

285587

ENSAPLT00000033836

25430699 - 25716285

285587