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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25717958_25724377_R

Intron Information:

Intron Rank:
146405
Intron Class:
major
Intron Phase:
Intron Coordinates:
25717958 - 25724377
Intron Length:
6420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTATATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TATCTCTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
75.6
0.58
0.9
69.2
35.9
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
57.8
0.32
1.7
75.91
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026117
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030495
25716398 - 25781145
64748
ENSAPLT00000047216
25716398 - 25761233
44836
ENSAPLT00000046686
25716398 - 25769489
53092