About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25724522_25769368_R

Intron Information:

Intron Rank:
146409
Intron Class:
major
Intron Phase:
Intron Coordinates:
25724522 - 25769368
Intron Length:
44847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCCTCATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTGTCCTCATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
72.1
0.5
0.9
65.7
34.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
51.7
0.05
1.9
63.13
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026117
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046686
25716398 - 25769489
53092