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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_25729855_25764295_R

Intron Information:

Intron Rank:
146400
Intron Class:
major
Intron Phase:
Intron Coordinates:
25729855 - 25764295
Intron Length:
34441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
75.1
35.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84.7
0.78
0.8
77.7
36
Minor 5ss
32.4
-2
3.2
42.3
44.8
Minor BPS
54.5
0.13
1.7
70.35
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026117
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021406
25729757 - 25769489
39733