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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2582656_2589214_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2582656 - 2589214
Intron Length:
6559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTGTTC
5'SS Class:
major
3'SS Sequence:
GTCTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TCTTTTTTACAG
Flanking Amino Acid:
GVWSPPTAPNEMYLKLEDVT
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.1
59.6
40.1
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
88.3
0.86
0.7
83.2
32
Minor 5ss
40.4
-1.1
3.5
55.7
44
Minor BPS
51.6
-0
1.8
59.29
43.1

Associated Gene:

Gene:
IPMK
Ensembl Gene ID:
ENSAPLG00000011011
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011464
2572598 - 2604318
31721