Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2589312_2604042_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2589312 - 2604042

Intron Length:

14731

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGTC

5'SS Class:

strong_major

3'SS Sequence:

TAATTTATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

CTCCCCTTAATT

Flanking Amino Acid:

GPREQEFYNKVYDSDCCDSI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.8

76.4

32.8

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

81.1

0.7

0.9

78.5

39.2

Minor 5ss

28.3

-2.5

3.6

40.1

46.3

Minor BPS

74.5

0.85

1.3

81.08

41.1

Associated Gene:

Gene:

IPMK

Ensembl Gene ID:

ENSAPLG00000011011

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011464

2572598 - 2604318

31721

ENSAPLT00000029737

2571296 - 2604128

32833