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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26012445_26012529_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26012445 - 26012529
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGCTTG
5'SS Class:
major
3'SS Sequence:
GTCTTTGATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTGTCTTTGATA
Flanking Amino Acid:
EVIGAELERQGNIRTAWCHC
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.4
60.6
46.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
74.3
0.55
1
68.6
41.3
Minor 5ss
41.5
-0.9
3.2
55.5
48.8
Minor BPS
73.9
0.75
1.1
77.53
33.6

Associated Gene:

Gene:
XPNPEP1
Ensembl Gene ID:
ENSAPLG00000013402
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014008
26012027 - 26039139
27113