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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26012597_26013634_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26012597 - 26013634
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCGCTTTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
ACTGTCATATCT
Flanking Amino Acid:
IDVSLLTQKELNWVNDYHQK
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
78.4
0.64
0.8
77.2
31.6
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
47.4
-0.1
1.9
66.42
44.4

Associated Gene:

Gene:
XPNPEP1
Ensembl Gene ID:
ENSAPLG00000013402
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014008
26012027 - 26039139
27113
ENSAPLT00000043488
26012468 - 26033018
20551
ENSAPLT00000034999
26012468 - 26042446
29979
ENSAPLT00000028601
26009225 - 26039139
29915