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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26013734_26014432_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26013734 - 26014432
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TTCCTAAGAATT
Flanking Amino Acid:
VVLVIPAETKYNFKNRGSLT
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
82.5
0.73
0.9
76.8
37.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
44.1
-0.3
1.9
64.24
40

Associated Gene:

Gene:
XPNPEP1
Ensembl Gene ID:
ENSAPLG00000013402
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014008
26012027 - 26039139
27113
ENSAPLT00000043488
26012468 - 26033018
20551
ENSAPLT00000034999
26012468 - 26042446
29979
ENSAPLT00000028601
26009225 - 26039139
29915
ENSAPLT00000019867
26009225 - 26039139
29915