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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26017609_26019350_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26017609 - 26019350
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTGCTTCTGGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
CTTGCTGTATCT
Flanking Amino Acid:
IYLLDSGAQYKDGTTDVTRT
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66
40.1
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
64.4
0.33
1.2
67.8
38
Minor 5ss
28.4
-2.5
3.1
31.4
36.6
Minor BPS
47.1
-0.1
2.3
70.73
46.8

Associated Gene:

Gene:
XPNPEP1
Ensembl Gene ID:
ENSAPLG00000013402
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028601
26009225 - 26039139
29915
ENSAPLT00000019867
26009225 - 26039139
29915
ENSAPLT00000014008
26012027 - 26039139
27113
ENSAPLT00000043488
26012468 - 26033018
20551
ENSAPLT00000034999
26012468 - 26042446
29979