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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26020772_26021880_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26020772 - 26021880
Intron Length:
1109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCCGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ACTAATTCAACC
Flanking Amino Acid:
CELFNWLEKEVPKGTVTEIT
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.1
34.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
68.5
0.42
1
62.6
39.8
Minor 5ss
36.8
-1.5
3.3
49.4
47.1
Minor BPS
48.6
-0.1
1.7
58.84
39.9

Associated Gene:

Gene:
XPNPEP1
Ensembl Gene ID:
ENSAPLG00000013402
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028601
26009225 - 26039139
29915
ENSAPLT00000019867
26009225 - 26039139
29915
ENSAPLT00000014008
26012027 - 26039139
27113
ENSAPLT00000043488
26012468 - 26033018
20551
ENSAPLT00000034999
26012468 - 26042446
29979