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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26026847_26027789_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26026847 - 26027789
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTATA
5'SS Class:
major
3'SS Sequence:
GTTTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCCCAA
U12 Branch Point Sequence:
CCCATCCCAACT
Flanking Amino Acid:
AYAVIGMNTIRLFIDGDRMM
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.2
34.6
Major BPS
54.3
0.11
1.2
64.5
33.7
Major PPT
85.9
0.81
0.7
84.4
30.5
Minor 5ss
32.9
-2
3
42.5
44.3
Minor BPS
44.3
-0.3
1.9
56.82
45.6

Associated Gene:

Gene:
XPNPEP1
Ensembl Gene ID:
ENSAPLG00000013402
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014008
26012027 - 26039139
27113
ENSAPLT00000043488
26012468 - 26033018
20551
ENSAPLT00000034999
26012468 - 26042446
29979
ENSAPLT00000028601
26009225 - 26039139
29915
ENSAPLT00000019867
26009225 - 26039139
29915