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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26027872_26030110_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26027872 - 26030110
Intron Length:
2239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCGTTCTTATTT
Flanking Amino Acid:
FVVTALDEVAWLFNLRGSDV
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88.2
0.86
0.7
80.5
36.7
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
56.9
0.29
1.6
67.58
44

Associated Gene:

Gene:
XPNPEP1
Ensembl Gene ID:
ENSAPLG00000013402
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028601
26009225 - 26039139
29915
ENSAPLT00000019867
26009225 - 26039139
29915
ENSAPLT00000014008
26012027 - 26039139
27113
ENSAPLT00000043488
26012468 - 26033018
20551
ENSAPLT00000034999
26012468 - 26042446
29979