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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26031737_26032050_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
26031737 - 26032050
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGCAGG
5'SS Class:
major
3'SS Sequence:
TTAATCCATGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACTTTTTTAATC
Flanking Amino Acid:
MDNNWTLMKMGLKDTPTQED
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
54.5
49.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
50.9
0.02
1.7
59.4
41.7
Minor 5ss
36.9
-1.5
3.1
39.5
46.2
Minor BPS
71
0.64
1.1
71.5
34.3

Associated Gene:

Gene:
XPNPEP1
Ensembl Gene ID:
ENSAPLG00000013402
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014008
26012027 - 26039139
27113
ENSAPLT00000043488
26012468 - 26033018
20551
ENSAPLT00000034999
26012468 - 26042446
29979
ENSAPLT00000028601
26009225 - 26039139
29915
ENSAPLT00000019867
26009225 - 26039139
29915