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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26032156_26032800_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26032156 - 26032800
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TAACCTCTAAAT
Flanking Amino Acid:
MTYLEGTAIITEQHA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
63.9
0.31
0.9
56.8
33.4
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
51.2
0.12
1.8
70.19
39.7

Associated Gene:

Gene:
XPNPEP1
Ensembl Gene ID:
ENSAPLG00000013402
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043488
26012468 - 26033018
20551