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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26032156_26033595_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26032156 - 26033595
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TAACCTCTAAAT
Flanking Amino Acid:
AFISGFDGSAGTAIITEQHA
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
63.9
0.31
0.9
56.8
33.4
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
51.2
0.12
1.8
70.19
39.7

Associated Gene:

Gene:
XPNPEP1
Ensembl Gene ID:
ENSAPLG00000013402
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028601
26009225 - 26039139
29915
ENSAPLT00000019867
26009225 - 26039139
29915
ENSAPLT00000014008
26012027 - 26039139
27113
ENSAPLT00000034999
26012468 - 26042446
29979