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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26112716_26131513_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
26112716 - 26131513
Intron Length:
18798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CACTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCTTTCTCACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.4
0.71
0.8
72.8
37.1
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
49.4
0.04
1.8
66.82
44.9

Associated Gene:

Gene:
ADD3
Ensembl Gene ID:
ENSAPLG00000004481
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033135
26112617 - 26155161
42545
ENSAPLT00000004663
26112617 - 26155161
42545