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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26142772_26144021_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26142772 - 26144021
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CCATCTTCACCT
Flanking Amino Acid:
SFAGFSSSSLSHGMVTPIND
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.4
39.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
48.9
-0
1.9
64.32
46.3

Associated Gene:

Gene:
ADD3
Ensembl Gene ID:
ENSAPLG00000004481
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035605
26126806 - 26155161
28356
ENSAPLT00000033135
26112617 - 26155161
42545
ENSAPLT00000025631
26093949 - 26156869
62921
ENSAPLT00000004663
26112617 - 26155161
42545
ENSAPLT00000045549
26093949 - 26155161
61213