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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26144174_26144303_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26144174 - 26144303
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
TTTTCCTCCATT
Flanking Amino Acid:
WAHLPNAYITVRVSKEHDHI
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
79.4
0.66
0.8
73.4
29.9
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
65.7
0.57
2
88.16
37.4

Associated Gene:

Gene:
ADD3
Ensembl Gene ID:
ENSAPLG00000004481
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033135
26112617 - 26155161
42545
ENSAPLT00000025631
26093949 - 26156869
62921
ENSAPLT00000004663
26112617 - 26155161
42545
ENSAPLT00000045549
26093949 - 26155161
61213
ENSAPLT00000035605
26126806 - 26155161
28356