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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26145826_26146765_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26145826 - 26146765
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTTATGAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTCCTAATT
Flanking Amino Acid:
IHIHTPATAAVSSMKCGILP
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.5
0.46
1.1
66.7
42.9
Minor 5ss
43.1
-0.8
3.2
69.3
40.9
Minor BPS
67
0.61
1.6
85.92
33.7

Associated Gene:

Gene:
ADD3
Ensembl Gene ID:
ENSAPLG00000004481
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035605
26126806 - 26155161
28356
ENSAPLT00000033135
26112617 - 26155161
42545
ENSAPLT00000025631
26093949 - 26156869
62921
ENSAPLT00000004663
26112617 - 26155161
42545
ENSAPLT00000045549
26093949 - 26155161
61213