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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26149083_26150240_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26149083 - 26150240
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGCCGA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTCCTTTAAG
Flanking Amino Acid:
GEASPRTKITWMKADESSKT
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
51.1
47.3
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
83
0.74
0.9
87.8
22.9
Minor 5ss
36.3
-1.5
3.3
47.3
48.2
Minor BPS
68.6
0.44
1.8
77.1
39.8

Associated Gene:

Gene:
ADD3
Ensembl Gene ID:
ENSAPLG00000004481
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035605
26126806 - 26155161
28356
ENSAPLT00000033135
26112617 - 26155161
42545
ENSAPLT00000025631
26093949 - 26156869
62921
ENSAPLT00000004663
26112617 - 26155161
42545
ENSAPLT00000045549
26093949 - 26155161
61213