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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26150361_26151665_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26150361 - 26151665
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATGT
Flanking Amino Acid:
PSEVLEKRNKIREQNRYDLK
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.1
0.61
0.9
73
36.4
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
60
0.39
1.9
79.06
43.7

Associated Gene:

Gene:
ADD3
Ensembl Gene ID:
ENSAPLG00000004481
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004663
26112617 - 26155161
42545
ENSAPLT00000045549
26093949 - 26155161
61213
ENSAPLT00000035605
26126806 - 26155161
28356
ENSAPLT00000033135
26112617 - 26155161
42545
ENSAPLT00000025631
26093949 - 26156869
62921