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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26151756_26152303_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26151756 - 26152303
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTTTTGTGATT
Flanking Amino Acid:
GIVVDKKPSPPMQFEDDEHA
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1
62.8
43.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
90.9
0.92
0.6
84.1
30.9
Minor 5ss
31.9
-2.1
2.7
39
40.1
Minor BPS
52.4
0.15
2
75.74
35.5

Associated Gene:

Gene:
ADD3
Ensembl Gene ID:
ENSAPLG00000004481
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035605
26126806 - 26155161
28356
ENSAPLT00000033135
26112617 - 26155161
42545
ENSAPLT00000025631
26093949 - 26156869
62921
ENSAPLT00000004663
26112617 - 26155161
42545
ENSAPLT00000045549
26093949 - 26155161
61213