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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26152428_26153694_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26152428 - 26153694
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACTAATTAAAA
Flanking Amino Acid:
TIERKQQGLEDAEQELFSDD
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.2
76.2
39.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.2
0.75
0.8
77.3
31.5
Minor 5ss
29.8
-2.3
3.1
41.5
44.9
Minor BPS
50.9
0.02
1.9
64.54
40.9

Associated Gene:

Gene:
ADD3
Ensembl Gene ID:
ENSAPLG00000004481
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035605
26126806 - 26155161
28356
ENSAPLT00000025631
26093949 - 26156869
62921
ENSAPLT00000004663
26112617 - 26155161
42545
ENSAPLT00000045549
26093949 - 26155161
61213