About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26153791_26154454_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26153791 - 26154454
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCCAC
5'SS Class:
major
3'SS Sequence:
TCCATTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TGCACCTAAATA
Flanking Amino Acid:
SPQNIPEKLEENHEDFYTQN
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
57.8
41.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
74.3
0.55
0.8
72.9
31.8
Minor 5ss
44.3
-0.6
2.8
59.2
45.5
Minor BPS
56.5
0.2
1.7
64.57
42.1

Associated Gene:

Gene:
ADD3
Ensembl Gene ID:
ENSAPLG00000004481
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025631
26093949 - 26156869
62921
ENSAPLT00000004663
26112617 - 26155161
42545
ENSAPLT00000045549
26093949 - 26155161
61213
ENSAPLT00000035605
26126806 - 26155161
28356