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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26154571_26156088_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
26154571 - 26156088
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTCAG
5'SS Class:
major
3'SS Sequence:
TGAATTGTAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGTTCCTTACTT
Flanking Amino Acid:
HDVEEDLSKRGLVSLCCPLD
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.4
59.7
46.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
52.4
0.06
1.2
52.9
44.9
Minor 5ss
28.5
-2.5
2.6
24.9
36.4
Minor BPS
75.3
0.87
1.5
88.65
36.5

Associated Gene:

Gene:
ADD3
Ensembl Gene ID:
ENSAPLG00000004481
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025631
26093949 - 26156869
62921