About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26176975_26204732_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26176975 - 26204732
Intron Length:
27758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGACAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CGGCTCTGACCT
Flanking Amino Acid:
GSGSNASIANSRAHLRLCLE
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66.2
39.8
Major BPS
69.6
0.49
1
59.5
39
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
31.2
-2.2
3.3
41.8
45
Minor BPS
46
-0.2
1.7
58.42
44.4

Associated Gene:

Gene:
MXI1
Ensembl Gene ID:
ENSAPLG00000029323
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024921
26176192 - 26206846
30655