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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26188550_26188742_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26188550 - 26188742
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
AGGTGGCTAATC
Flanking Amino Acid:
GTASTRSARPRSTHNELEKN
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
85.9
0.81
0.8
77.4
36.9
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
39.6
-0.8
2.4
49.82
41

Associated Gene:

Gene:
MXI1
Ensembl Gene ID:
ENSAPLG00000029323
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023392
26187939 - 26208307
20369