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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26188773_26204732_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26188773 - 26204732
Intron Length:
15960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CGGCTCTGACCT
Flanking Amino Acid:
RSTHNELEKNRRAHLRLCLE
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.5
39.2
Major BPS
69.6
0.49
1
59.5
39
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
36.6
-1.5
2.7
46.7
41.7
Minor BPS
46
-0.2
1.7
58.42
44.4

Associated Gene:

Gene:
MXI1
Ensembl Gene ID:
ENSAPLG00000029323
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034368
26176439 - 26208307
31869
ENSAPLT00000023392
26187939 - 26208307
20369
ENSAPLT00000004486
26176192 - 26208307
32116
ENSAPLT00000044317
26181389 - 26208307
26919