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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2620613_2624835_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2620613 - 2624835
Intron Length:
4223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCATTT
Flanking Amino Acid:
VYCRCWRSKKFPLCDGSHTK
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.9
0.85
0.7
85.8
27
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
56.1
0.27
1.8
75.31
42.2

Associated Gene:

Gene:
CISD1
Ensembl Gene ID:
ENSAPLG00000010904
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011348
2620523 - 2625096
4574